EF Core changed the way how GUIDs are stored in the SQLite database. Starting from version 3.0, they are stored as TEXTGitHub. But what is you want to change it back. Then you need to introduce a value converter to convert GUIDs to byte arrays.
Here is an extension method to use in OnModelCreating of DbContext. It scans all properties with Guid or Guid? types, sets their column types as BLOB, and registers converters.